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GitHub Action - R pkgcheck

Source: ropensci-review-tools/pkgcheck-action: GitHub action for {pkgcheck}

Contents

Overview

This package contains a Github Actions script to automatically check R packages with rOpenSci’s {pkgcheck} system which is run on all packages submitted for peer review. This action will implement a GitHub Action to ensure your package is ready to submit to rOpenSci‘s peer review system. The results are shown in the workflow output, and can also be posted in a new or updated GitHub Issue.

Usage

Like the GitHub actions functions from the usethis package, the pkgcheck::use_github_action_pkcheck() function will create a workflow file called pkgcheck.yaml in your local .github/workflows directory.

The default workflow has the following relatively simple structure:

name: pkgcheck

# This will cancel running jobs once a new run is triggered
concurrency:
  group: ${{ github.workflow }}-${{ github.head_ref }}
  cancel-in-progress: true

on:
  # Manually trigger the Action under Actions/pkgcheck
  workflow_dispatch:
  # Run on every push to main
  push:
    branches:
      - main

jobs:
  check:
    runs-on: ubuntu-latest
    steps:
      - uses: ropensci-review-tools/pkgcheck-action@main

There are also several parameters which can be used to modify the workflow, as described in the following section.

Workflow Parameters

The yaml workflow file which defines this action includes the following list of inputs:

inputs:
  ref:
    description: "The ref to checkout and check. Set to empty string to skip checkout."
    default: "${{ github.ref }}"
    required: true
  post-to-issue:
    description: "Should the pkgcheck results be posted as an issue?"
    # If you use the 'pull_request' trigger and the PR is from outside the repo
    # (e.g. a fork), the job will fail due to permission issues
    # if this is set to 'true'. The default will prevent this.
    default: ${{ github.event_name != 'pull_request' }}
    required: true
  issue-title:
    description: "Name for the issue containing the pkgcheck results. Will be created or updated."
    # This will create a new issue for every branch, set it to something fixed 
    # to only create one issue that is updated via edits. 
    default: "pkgcheck results - ${{ github.ref_name }}"
    required: true
  summary-only:
    description: "Only post the check summary to issue. Set to false to get the full results in the issue."
    default: true
    required: true
  append-to-issue:
    description: "Should issue results be appended to existing issue, or posted in new issues."
    default: true
    required: true

The easiest way to customize these inputs is with the pkgcheck::use_github_action_pkgcheck() function in R, the documentation of which includes the following example:

use_github_action_pkgcheck (inputs = list (`post-to-issue` = "false"))

That will produce a .github/workflows/pkgcheck.yaml file (or will update an existing file by setting the additional parameter, overwrite = TRUE) with the job: section changed from the default version shown above of:

jobs: 
  check:
    runs-on: ubuntu-latest
    steps:
      - uses: ropensci-review-tools/pkgcheck-action@main

to the modified version of:

jobs: 
  check:
    runs-on: ubuntu-latest
    steps:
      - uses: ropensci-review-tools/pkgcheck-action@main
        with:
          summary-only: false

That demonstrates that setting any of these parameters to non-default values by passing them as named list items to pkgcheck::use_github_action_pkgcheck() appends additional yaml lines to the workflow file through the with: statement.

Workflows can thus be controlled either from R as shown above, or by directly editing the workflow file using with: statements.

In R:

  • Parameters must be passed as named items of a list named “inputs”
  • Parameter names containing dashes must be specified within backticks.
  • Parameter values must be specified in quotation marks.

In yaml scripts, parameter names and values should be specified exactly “as is”, without quotation marks or backticks.

Posting {pgkcheck} results to a GitHub issue in your repository

The default workflow file posts the {pkgcheck} results to an issue in the repository in which it was run. This requires the workflow to have write access to your repo, which is automatically the case for events triggered within your repository such as pushes and pull requests from collaborators with write access.

If a pull request is opened from outside the repository such as from a fork, the default github.token will not have write access, and so will not be able to put results in an issue. This default behaviour protects your repository from malicious use of pull_request triggers.

:warning::warning: Never use the pull_request_target trigger as this will allow forks to run arbitrary code with access to your repos secrets:warning::warning: For more information see here.

Backlinks:

list from [[GitHub Action - R pkgcheck]] AND -"Changelog"